11
Enfeksiyon Hastalıklarının Tanısında Moleküler Ve Diğer Güncel Yöntemler
21. Biochemical tests for the identification of Aerobic Bacteria. In: Leber AL ed. Clinical Microbiology Procedures Handbook. 4th edition. Washington, DC: ASM Press; 2016.
22. Bakteriyoloji Test Prosedürleri, Ulusal Mikrobiyoloji Standartları Bulaşıcı Hastalıklar Laboratuvar Tanı Rehberi, T.C. Sağlık Bakanlığı Türkiye Halk Sağlığı Kurumu Başkanlığı Mikrobiyoloji
Referans Laboratuvarları Daire Başkanlığı Ankara: Aydoğdu Ofset Matbaacılık Ambalaj San ve Tic Ltd Şti; 2014.
23. Presumptive Identification tests for Yeasts Isolated on Primary Culture. In: Leber AL ed. Clinical Microbiology Procedures Handbook. 4th edition. Washington, DC: ASM Press; 2016.
24. Carroll KC, Patel R. Systems for Identification of Bacteria and Fungi. In: Jorgensen JH, Pfaller MA, Carroll KC, eds. Manual of Clinical Microbiology.11th edition. Washington DC: ASM Press;
2015.
25. https://www.beckmancoulter.com/products/microbiology/labpro-information-manager (erişim tarihi:02.205.2024).
26. http://www.bd.com/ds/productCenter/IS.asp file:///C:/Users/Casper/Downloads/DS_IDS_Comparison-of-BD_Phoenix-AP-Workflow-with-VITEK_WP_EN.pdf (erişim tarihi:03.05.2024).
27. https://www.toshindia.com/products/bacteria-yeast-and-fungi-identification-system (erişim tarihi:03.05.2024).
28. https://gcms.cz/labrulez-bucket-strapi-h3hsga3/application::paper.paper/Sherlock_MIS_Specification_EFAME.pdf(erişim tarihi:03.05.2024).
29. www.biomic.com (erişim tarihi: 03.05.2024).
30. Matrix-assisted laser desorption/ionisation – time of flight mass spectrometry (MALDI-TOF MS) test. UK Standards for Microbiology Investigations. TP 40 Issue 1.1. Public Health England;
2019.
KONU 10: ENFEKSİYON HASTALIKLARININ SEROLOJİSİ
KAYNAKLAR
1. Us D. Serolojik Tanı Yöntemleri: Ankara: Hacettepe Üniversitesi Yayınları, 2006.
2. Us D. Temel İmmünoloji ve seroloji Ankara Hipokrat Kitabevi 2016.
3. Abbas, AK, Lichtman AH. Basic Immunology, Functions and Disorders of the immune system 3rd ed.: Philadelphia: Saunders Elsevier, 2011.
4. Folds JD; Normansell DE. Pocket Guide to Clinical Immunology: Washington DC, ASM Pres, 1999.
5. Mahon CR, Tice D. Clinical Laboratory Immunology: New Jersey: Pearson Prentice Hall Publishing, 2005.
6. Murray PR, Baron EJ, Jorgensen JH, Landry ML, Pfaller MA. Manual of Clinical Microbiology 9th ed. çeviri editörü Başustaoğlu A. Ankara: Atlas Kitapçılık, 2009.
7. Clark RB, Lewinski MA, Loeffelholz MJ ve Tibbetts RJ. Verification and validation of procedures in the clinical microbiology laboratory Cumi- tech 31A, Washington DC: ASM Pres, 2009.
8. Rabenau HF, Kessler HH, Kortenbusch M, Steinhorst A, Raggam RB, Berger A. Verification and validation of diagnostic laboratory tests in clinical virology. J Clin Virol 2007: 40: 93-98.
9. Banoo S, Bell D, Bossuyt P, et al. TDR Diagnostics Evaluation Expert Panel. Evaluation of diagnostic tests for infectious diseases: general principles. Nat Rev Microbiol 2010; 8: 17-29.
10. Versalovic JV. Manual of Cllinical Microbiology, 10 th ed. : Wahington DC: ASM Press, 2011.
11. Centers for Disease Control and Prevention. Positive test results for acute hepatitis A virus infection among persons with no recent history of acute hepatitis-United States, 2002-2004. Morb
Mort Weekly Rep 2005; 54: 453-456.
12. Murray PR, Rosenthal KS, Pfaller MA. Medical Microbiology Ninth ed. Elsevier. 2021
13. Murray PR, Shea YR. Pocket Guide to Clinical Microbiology, 3rd ed.: Washington DC: ASM Pres, 2004.
14. Parslow TG, Stites DR, Terr AI, Imboden JE. Medical Immunology 10th ed.: New York (NY): Lange Medical Books/McGraw Hill, 2001.
15. Nara PL, Lin G. HIV-1: the confounding variables of virüs neutralization. Curr Drug Targets Infect Disord 2005; 5: 157-170.
16. Parker V, Tormey CA. The Direct Antiglobulin Test: Indications, interpretation, and pitfalls. Arch Pathol Lab Med. 2017;141:305-310.
17. Antigen-antibody interactions, immune assays, and experimental systems. In: Coico R, Sunshine G, Benjamini E. Eds. Immunology A Short Course 5th ed. New Jersey: Wiley& Sons, 2003:59-
78.
18. Fei F, Marques MB, Staley EM, Williams LA. An Automated Method for Direct Antiglobulin Testing and the Resulting Amount of Phototherapy Used at a Large Academic Medical Center.
Lab Med 2020;51:50-55.
19. Orduna A, Almaraz A, Prado A, et al. Evaluation of an immunocapture-agglutination test (Brucellacapt) for serodiagnosis of human Brucellosis. J Clin Microbiol 2000; 38: 4000-5.
20. Koçman EE, Erensoy MS, Taşbakan M, Çiçeklioğlu M. Comparison of standard agglutination tests, enzyme immunoassay, and Coombs gel test used in laboratory diagnosis of human brucel-
losis. Turk J Med Sci 2018;48:62-67.
21. Aoyagi K, Ashihara Y, Kasahara Y. Immunoassays and immunochemistry. In: McPherson RA, Pincus MR. Eds. Henry’s Clinical Diagnosis and Management by Laboratory Methods. 23rd ed.
Missorui: Elsevier, 2017:862-889.
22. Karakuş R. Serolojik testler. Türkiye Klinikleri J Inf Dis-Special Topics 2008; 1: 125-130.
23. Aybay C. İmmunolojik teknikler. In: Mutlu G, İmir T, Cengiz AT, Usta- çelebi Ş, Tümbay E, Mete Ö. Eds. Temel ve Klinik Mikrobiyoloji 1. Baskı Ankara: Güneş Kitabevi, 1999:325-336.
24. Carpenter AB. Immunoassays for the diagnosis of infectious diseases. In: Versalovic J, Carroll KC, Funke G, Jorgensen JH, Landry ML, Warnock DW. Eds. Manual of Clinical Microbiology
10th ed. Washington: ASM Press, 2011:60-71.
25. Laboratory diagnosis by immunologic methods. In: Procop GW, Church DL, Hall GS, Janda WM, Koneman EW, Schreckenberger PC, Woods GL. Eds. Koneman’s Color Atlas and Textbook
of Diagnostic Microbiology 7th ed. Philedelphia:Wolters Kluwer, 2017: 111-136.
26. Lowell C. Clinical laboratory methods for detection of antigens and an- tibodies. In: Parslow GT, Stites DP, Terr AI, Imboden JB. Eds. Medical Immunology 10th ed. NY:McGraw Hill,
2001:215-233.
27. Asmare Z, Erkihun M. Recent application of DNA Microarray techniques to diagnose infectious disease. Pathol Lab Med Int 2023; 15: 77-82.
28. Ma X, Li Y, Liang Y, et al. Development of a DNA microarray assay for rapid detection of fifteen bacterial pathogens in pneumonia. BMC Microbiol 2020;20:177.
29. Di Nardo F, Chiarello M, Cavalera S, Baggiani C, Anfossi L. Ten Years of Lateral Flow Immunoassay Technique Applications: Trends, Challenges and Future Perspectives. Sensors (Basel).
2021;21:5185.
30. Abbas Ak, Lichtman AH, Pillai S. Cellular and Molecular Immunology 10th ed. Philadelphia Elsevier 2022.
31. Sack U, Tarnok A, Rothe G. Cellular Diagnostics: Basic principles, Methods and Clinical Applications of Flow Cytometry, S. Karger GmBH. 2008.
KONU 11: ENFEKSİYON HASTALIKLARININ TANISINDA MOLEKÜLER VE DİĞER GÜNCEL YÖNTEMLER
KAYNAKLAR
1. Schmitz, J. E., Stratton, C. W., Persing, D. H., & Tang, Y. W. Forty years of molecular diagnostics for infectious diseases. J. Clin. Microbiol. 2022, 60(10), e02446-21.
2. Liu Q, Jin X, Cheng J, Zhou H, Zhang Y, Dai Y. Advances in the application of molecular diagnostic techniques for the detection of infectious disease pathogens. Molecular Medicine Reports.
2023, 3;27.
3. Mullis, K. B., Faloona F. A. Specific synthesis of DNA in vitro via polymerase catalyzed chain reaction. Methods Enzymol. 1987, 155:335-350.
4. Saiki, R. K., Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R., Horn, G. T., Mullis, K. B., Erlich, H. A. Primer-Directed Enzymatic Amplification of DNA with a thermostable DNA polymerase.
Science. 1988, 239:487-491.
5. Pershing, D. H. In vitro nucleic acid amplification techniques. Pershing, D. H., Smith, T. F., Tenover, F. C., White, T. J. (ed). Diagnostic Molecular Biology, Principles and Applications. Ame-
rican Society for Microbiology. Washington, D.C. 1993, 51-87.
6. Bej, A. K., Mahbubani, M. H., Atlas, R. M. Amplification of nucleic acids by polymerase chain reaction (PZT) and other methods and their applications. Crit. Rev. Biochem. Mol Biol. 1991,
26:301-334.
7. Bej, A. K., Mahbubani, M. H. Thermostable DNA polymerases for in vitro DNA amplification. Griffin, H. G., Griffin, A. M. (ed). PZT Technology. Current Innovations. CRC Press. Boca
Raton, Ann Arbor, London, Tokyo. 1994, 219-237.
8. Kocagöz T., E. Yılmaz, Ş. Özkara, S. Kocagöz, M. Hayran, M. Sachedeva, H. F. Chambers. Detection of Mycobacterium tuberculosis in Sputum Samples by Polymerase Chain Reaction using a
simplified procedure. J Clin Microbiol. 1993. 31:1435-1438.
9. Arya M, Shergill IS, Williamson M, Gommersall L, Arya N, Patel HR. Basic principles of real-time quantitative PCR. Expert Rev Mol Diagn. 2005 Mar;5(2):209-19.
10. Harshitha R, Arunraj DR. Real-time quantitative PCR: A tool for absolute and relative quantification. Biochem Mol Biol Educ. 2021, 49(5):800-812.
11. Mo Y, Wan R, Zhang Q. Application of reverse transcription-PCR and real-time PCR in nanotoxicity research. Methods Mol Biol. 2012;926:99-112.
12. Yang J, Li D, Wang J, Zhang R, Li J. Design, optimization, and application of multiplex rRT-PCR in the detection of respiratory viruses. Crit Rev Clin Lab Sci. 2022, 59(8):555-572.
13. Yang J, Li D, Wang J, Zhang R, Li J. Design, optimization, and application of multiplex rRT-PCR in the detection of respiratory viruses. Crit Rev Clin Lab Sci. 2022, 59(8):555-572.
14. Ramanan P, Bryson AL, Binnicker MJ, Pritt BS, Patel R. Syndromic Panel-Based Testing in Clinical Microbiology. Clin Microbiol Rev. 2017, 15;31(1):e00024-17.
15. Merdan, O., Sağlık, İ., Dilşad Aksoy, F., Önal, U., Özakın, C., Hacimustafaoğlu, M. K. 2024. Evaluation of the Bio-Speedy Meningitis/Encephalitis Panel in the Diagnosis of Central Nervous
System Infections Merkezi Sinir Sistemi Enfeksiyonlarının Tanısında Bio-Speedy Menenjit/Ensefalit Panelinin Değerlendirilmesi. Mikrobiyoloji Bülteni. 58, 3:270-283.
16. Seki M, Kilgore PE, Kim EJ, Ohnishi M, Hayakawa S, Kim DW. Loop-Mediated isothermal amplification methods for diagnosis of bacterial meningitis. Frontiers in Pediatrics. 2018, 12;6.
17. Glökler J, Lim TS, Ida J, Frohme M. Isothermal amplifications: a comprehensive review on current methods. 2021;56:543–86.
18. Hu T, Chitnis N, Monos D, Dinh A. Next-generation sequencing technologies: An overview. Hum Immunol. 2021, 82(11):801-811.
19. Jauneikaite E, Baker KS, Nunn JG, Midega JT, Hsu LY, Singh SR, et al. Genomics for antimicrobial resistance surveillance to support infection prevention and control in health-care facilities.
The Lancet Microbe. 2023, 14;4(12):e1040–6.
20. Quince, C., Walker, A., Simpson, J. et al. Shotgun metagenomics, from sampling to analysis. Nat Biotechnol. 2017, 35, 833–844.
21. Govender KN, Street TL, Sanderson ND, Eyre DW. Metagenomic sequencing as a pathogen-agnostic clinical diagnostic tool for infectious diseases: a systematic review and meta-analysis of
diagnostic test accuracy studies. J Clin Microbiol 2021; 59:e0291620.
22. Erdemir F, Karabulut A, Aydin U, Guler S, Cicek A, Gokduman SN, Eser E, Birdogan S, Kocagoz T. Metagenomic analysis of atheroma plaques for identification of microorganisms indicates
presence of Toxoplasma gondii as a possible etiological agent. J Infect Public Health. 2024,17(10):102539.
